To Soak or Not to Soak Beans?

Beans, Soaking and Phytates

Remember that rhyme: Beans, beans, that wonderful fruit, the more you eat, the more you toot? Ever wished you could toot less? Soaking may make help. It’s a simple and traditional method of starting a pot of beans that was replaced in many cookbooks by boiling or pressure-cooking. If you have already eliminated beans from your diet, such as in the Paleo diet, you may not be interested. But if you are still eating this very economical food, here is why you might take that great step backward in culinary processing.

I soak my beans and grains. At first I did so because of concerns over phytates, which prevent digestion. It made such sense to me that eating undigestible proteins would cause … well … indigestion. When unsoaked beans and grains are cooked, most of the phytates remain in the food. The phytates are reduced by soaking as well as by cooking. There are pros and cons to this (see below). I soak mine for 24 hours, in water acidified with vinegar, rinsing every few hours. I like the legumes to at least double in size, like these cranberry beans did (unsoaked on left):

In addition to wanting reduced phytates, I also soak because the beans then take less time to cook, are more flavorful to my palate, and result in almost no digestive issues in people whom I’ve fed them to. I most often make my cooked beans into refried beans ( a legacy from growing up in Southern California) or into something like the salad recipe I’ve shared here, to be sure to include raw foods along with the cooked ones. I have used navy beans because they are GAPS-diet friendly, cook quickly and take the other flavors in the salad well.

Other legumes that are tasty in this recipe are cranberry beans and lentils. I never use soybeans because, according to my naturopath, they have too many phytoestrogens for me; and although I love garbanzos, they never really get quite tender enough for this recipe.

Navy Bean Salad


  • 1 cup navy beans (soaked 24 hours, then cooked in crock pot until tender)
  • ½ c red onion, finely chopped
  • ½ c kalamata olives, chopped
  • handful of parsley, finely chopped
  • 1/2 cup  soaked, lightly salted, toasted hazelnuts, coarsely chopped


  • 1/4 cup fresh lemon juice (from 1 lemon)
  • 1/4 cup extra-virgin olive oil
  • 1/2 teaspoon Real salt
  • 1/4 teaspoon freshly ground black pepper

Chemistry and controversy:

Phytic acid and its salt, phytate, are abundant in bran and seeds. It is the way seeds store phosphorus, an element all organisms need to form ATP and DNA. Humans don’t have the enzyme to obtain the phosphorus from the phytates, but ruminants like cows do. In addition, the phytates bind with minerals such as calcium, magnesium, zinc and iron in the diet and prevent them from being absorbed and used by us. Seeds like grains and legumes, as well as nuts, contain phytates whose role is to prevent germination until the seed is in a moist enough environment to survive.

The interference with mineral absorption is most risky for people who have based a very large amount of their diets on grains and beans and don’t supplement with electrolyte minerals such as magnesium and calcium. Some diets in third-world countries rely on grain-legume combinations. I suspect, though, that people in those countries are more likely to soak their seeds, such as the alkaline treatment of corn before making tortillas, than busy first-world cooks.

Beyond these basic facts, however, there is considerable disagreement about how healthful the phytates are in the human diet. In fact, this is one of the most confusing topics I’ve researched for this blog! Dietary persuasions range from grain-and-bean-rich, vegan diets, to grain-and-bean-free diets, such as Paleo and similar ones. I have not included all of the thoughts, since this page would be very long and would duplicate some of the fascinating work already done. I include samples below, and encourage you to read further.

Chris Kresser, a naturopathic physician, describes phytates as toxins to avoid, and summarizes several reasons in his clear and well-written site. He lists several dangers of refined cereal grains, in particular.

The Rodale Foundation
 states, “as long as you’re consuming 1,200 mg of calcium a day, phytate-packed foods—such as legumes (lentils, beans), almonds, and whole grains—won’t hurt your body’s ability to process the calcium,” says author Cosman. “You’ll reap the bone-protecting benefits both substances provide, plus other perks: Legumes, for example, are packed with fiber, natural phytochemicals, minerals, and vitamins that are beneficial to health.”

At least two sources suggest that phytates can be helpful in nutrition, including inhibiting cancer cells as summarized by this abstract from the National Center for Biotechnology Information.

Lastly, the National Osteoporosis Foundation suggests that not getting enough phytates can be dangerous for bone health here.  “Multivariate linear regression analysis indicated that body weight and low phytate consumption were the risk factors with greatest influence on bone mineral density. Phytate consumption had a protective effect against osteoporosis, suggesting that low phytate consumption should be considered an osteoporosis risk factor.”

Maybe now you are as confused as I am! For now, I’m leaving wheat (and any refined grains) out of my diet for many reasons, but leaving soaked beans, in moderation, in.


Try The Low-Sugar Challenge

The Low-Sugar Challenge: One of the take-home “personal experiments” I offer to my high school students is to stop eating refined sugars for a week (assuming there are no health conditions that suggest it would be hazardous to a particular student). Perhaps many of you are far beyond this, but over many years of teaching science, I noticed most students found it a new idea. I tell them that my first experience in doing so was to give up sugar for Lent, and after those 40 days the thought of sweets was obnoxious! Those who tried the week all said they learned a tremendous amount about how much sugar they were eating and what foods had very little. Almost all found their cravings for sweets declined even after a few days and their appreciation for fresh fruits and vegetables increased. Their success depended greatly on what sorts of foods were available at home.

Are you the sort of person who has to taper off slowly, or do you go cold turkey? I will confess I love carbohydrates and have worked on my intake of them for many years. You should not expect to ditch all sweets overnight. Or you may have grown up without eating very many; the cuisines of countries like Japan and Spain still consider their less-sweet desserts to be preferable to American ones. The most important thing is to make a plan and then keep track of how you feel.

The sugars to look for on food labels include: glucose, fructose, dextrose, sucrose, maltodextrin, corn syrup, cane juice. The presence of the name of the label it means the sweetener was added, rather than naturally-occurring. A chart of the glycemic index of various foods might be fascinating and helpful to you. Fruit is preferable to fruit juice, since fruit still has the fiber and pulp that make it a whole food. At first you will miss and crave the refined sugars but you will experience this less and less as time goes on. Eventually you will find you are eating few foods with sugars listed on the labels, and if you really make progress, you will be eating very few foods that have labels at all.

What should I eat? There are several sources of meal plans and shopping lists, of which I list only two. My current favorite is online, called The Comprehensive Elimination Diet. I discovered it in a search last year when I was struggling to recover from stuffed-up ears following bronchitis. I stayed on it for about six weeks and lost several pounds without really planning to, in addition to clearing my ears. I liked that! There is quite a bit of meat in the plan, so if you are vegetarian or vegan, only about half of the recipes will work for you. Also fermented foods are not included, so be sure to consider how you will obtain probiotics.  This link contains the rationale for an elimination diet, a shopping list, a seven-day meal plan and recipes, and is published by the Institute for Functional Medicine.

The Fat Flush Plan has two weeks of meals for each of three levels, and detailed, thoughtful and thought-provoking explanations for each item in them. There are vegetarian as well as meat-based recipes. Some of the recipes at Level 1, the most strict, were not flavorful enough to make we want to make them again, but I appreciated the creativity and emphasis on fresh vegetables.

Why reduce sugars in the diet: When we eat, our food is digested and depending on the type of food, blood sugar enters our bloodstream from the intestines. As it reaches a certain level in the blood, insulin is released into the bloodstream to reduce the blood sugar. According to Potatoes Not Prozac, alcohol and white sugars and starches raise blood glucose the most. The more sugars we eat, the higher the blood sugar rises and the more insulin is needed to bring it back to a healthy level. The higher the blood sugar rises, the more likely we are to experience a crash (low blood sugar) with resulting cravings and irritability. According to The Fat Flush Plan, the extra sugars are first stored in the liver and muscles as glycogen (a substance similar to starch), and then as fat. There are concerns that the abundance of sugars available to us in our diets may be causing insulin resistance, a situation in which the blood sugar is no longer be managed at a healthy level. People who are not genetically disposed to diabetes may begin to develop it over time.

Too hard-core? Think about a craving: Chocolate? Sodas? Four sugars in your coffee? What if you start there? Choose one to give up for a week. Maybe you’ll get inspired and give up another. Think small steps on the way to a large one. Focus on what you CAN eat. Apply what you would have spent on the chocolate or soda to your favorite fruit.

Tip: to make drinking plain or filtered water more interesting, add a squeeze of lemon to each glass.

Energy Bars Recipe. These are filling, since they contain healthy oils and fiber from nuts and coconut. They can be made more or less sweet depending on your progress. They get their sweetness from the pineapple, which of course contains naturally-occurring sugars. You may be able to enjoy these without the honey, or include it if you substitute less-sweet dried fruit like apricots or cherries. Enjoy! Adapted from “Nutri-Ola” in The Comprehensive Elimination Diet.

In food processor, grind (if not already ground):

  • 1 c raw cashews
  • 1 c macadamia nuts
  • 1  c dried unsweetened pineapple
  • 1/4 c goji berries (these work best if soaked in a small amount of filtered water for a few minutes)

Process in:

  • 3/4 c coconut flour
  • 1/4  c sesame seeds
  • 2 tbs flax seeds, ground


  • 1/3 c sesame, sunflower or coconut oil
  • 1/8 c honey (optional, to taste – try leaving it out)
  • ¼ tsp Himalayan, Real or other pink sea salt

Process until all is mixed and begins to form a ball

Spread in 7″ x 11″ glass baking pan. Bake at 325 degrees F for about 10 minutes to set. Cool, then cut into bars. Makes about 12 bars, 2 ½ x 2 ½ inches in size. When cool, refrigerate. Keeps for about a week.­ Grain-free, gluten-free, egg-free.